
Martin Triska
Verified Expert in Engineering
Visualization Developer
Martin is a well-rounded data scientist with expertise in bioinformatics, genetics, data visualization, and machine learning. With a master's degree in intelligent computer systems and several years of experience, he's ready to tackle his next challenge.
Portfolio
Experience
Availability
Preferred Environment
Pandas, TensorFlow, Python, Git, Ubuntu, Linux
The most amazing...
...thing I've developed was a machine learning approach to transcription start site detection (start of a gene).
Work Experience
Senior Bioinformatics Specialist
Breakthrough Genomics
- Automated sentiment estimation from scientific papers.
- Built neural network deducing pathogenicity of novel mutations based on available information.
- Developed back-end system seamlessly switching VPN connections to simulate multiple users.
- Worked on distance, git source control system, and weekly Skype meetings.
- Visualized all sorts of data in the most understandable way possible.
Pre-doctoral research fellow
Children's Hospital Los Angeles
- Analyzed gene expression patterns in the development of Retinoblastoma in fetal retina tissue.
- Developed a machine learning approach to identifying the transcription start site.
- Developed method for discovery of novel transcription factor binding sites (sequence motifs).
- Analyzed genomes of resistant Mycobacterium strains.
- Managed research Linux servers.
Research assistant
University of South Wales
- Researched transcription factor binding sites.
- Managed Linux servers.
Experience
Set of Scripts for Analysis of Single-cell Gene Expression
https://github.com/MacanPN/single-cell-toolsSkills
Languages
Python, SQL, R, C++, Bash
Libraries/APIs
NumPy, Pandas, SciPy, Matplotlib, TensorFlow, TensorFlow Deep Learning Library (TFLearn), Keras, PyTorch, Open MPI, OpenMP
Tools
BigQuery, Plotly, Git
Paradigms
Scrum, Data Science
Platforms
Linux, Ubuntu, Oracle, Google Cloud Platform (GCP), Illumos, Amazon Web Services (AWS)
Other
Genetics, Next-generation Sequencing, DNA Sequencing, RNA Sequencing, Data, Data Analysis, Complex Data Analysis, Data Visualization, Machine Learning, Genetic Algorithms, Neural Networks, Visualization, Google BigQuery, Dashboards, Statistical Analysis, Statistical Modeling, Data Mining, Statistics, Artificial Intelligence (AI), Natural Language Processing (NLP), GPT, Generative Pre-trained Transformers (GPT)
Frameworks
Boost
Education
Master's Degree in Intelligent Computer Systems
University of South Wales - Pontypridd, United Kingdom
Bachelor's Degree in Information Technologies
Brno University of Technology - Brno, Czech Republic
Certifications
Responsible Conduct of Research
Children's Hospital Los Angeles