Zhuyi Xue

Worked out and provided answers to all problem sets in one of the most popular machine learning courses online, CS229 by Stanford.

10 GitHub stars

1.2k views biweekly

Convert the whole NCBI taxonomy into lineages of all known organisms.

For example, the taxonomic lineage of human beings is Eukaryota > Chordata > Mammalia > Primates > Hominidae > Homo > Homo sapiens.

27 GitHub stars

Reinforcement learning algorithms implemented in JavaScript and React, demonstrated with Gridworld toy example.

Learning reinforcement learning by implementing the algorithms from reinforcement learning an introduction Edit

17 GitHub stars

SamFormat interprets genomics code on the client side in a highly responsive manner.

Google rank 2nd if searching for "sam flag" as of this entry.

Rsempipeline analyzes massive RNA-Seq data from Gene Expression Omnibus (GEO) database in an efficient and economical manner. It takes care of communications between a localhost and a remote HPC as well as adaptive resource consumption automatically. It also comes with a web-based visualization component for monitoring analysis progress.

TPR Parser closes a 5-year old feature-request ticket for MDAnalysis, a software package for analyzing molecular dynamics (MD) data in Python. TPR is the file that contains all the structural topology information and running parameters of a MD system in Gromacs encoded by XDR Standard (RFC 1014).