Artem Kondyukov
Verified Expert in Engineering
Machine Learning Developer
Saint Petersburg, Russia
Toptal member since July 21, 2016
Artem has a wide range of interests, mainly in the realm of machine learning applications for computer vision. He has been developing pipelines for computer-aided diagnosis systems (CNN, Python and Keras, NumPy, TensorFlow). He has experience in client-server applications for laser shooting galleries (C++ and Qt). He has developed a couple of simple web services (Python and Django, Scala and Play.)
Portfolio
Experience
- Git - 5 years
- Artificial Intelligence (AI) - 4 years
- Machine Learning - 4 years
- Computer Vision - 3 years
- Bioinformatics - 2 years
- Flask - 1 year
- Python 3 - 1 year
- Deep Learning - 1 year
Work Experience
Head of Small Molecule Drug Discovery
Biocad
- Managed a team that built a web service storing data about synthetized molecules.
- Reduced time required for product teams to reach milestones by introducing Scrum framework techniques.
- Reached a milestone (hit identification) in a drug discovery project while leading a cross-functional team of synthetic chemists, cell biologists, and medicinal chemists.
Data Analyst
BIOCAD
- Constructed a VAE-based generative model for molecule properties optimization; used Python and Keras.
- Implemented a library for reading, writing, and searching through molecules; used the following stack of Haskell.
- Built a system of machine learning models to predict ways in obtaining a certain chemical molecule; used Python, Keras.
- Managed a team that built data pre- and postprocessing pipelines. The data obtained from different databases of chemical reactions.
Junior Researcher
Innopolis University
- Constructed a pipeline for left ventricle segmentation on chest MRIs.
- Developed several pipelines for segmenting lungs, clavicles, and ribs on X-ray images using CNN.
- Initated the development on a bone suppression system based on neural network regressors.
- Conducted research in the field of X-ray image segmentation.
- Took part in ISBI 2016 so as to build my professional network and dive into current trends in medical imaging.
Bioinformatician
Institute of Cytology and Genetics
- Developed a pipeline for sequencing data analysis (finding single nucleotide polymorphisms and their potential roles in behavior).
- Performed molecular biological routines.
- Developed a pipeline for primer design using the existing software and databases.
Lab Intern
Institute of Chemical Biology and Fundamental Medicine
- Performed molecular biological routines.
- Used short-read aligners so as to build phage genomes.
- Utilized databases for genome scaffolding and gene detection and annotation.
- Employed cluster analysis for phylogeny tree construction.
Junior Developer
Laser Ruby
- Built a cross-platform server-client application for controlling multiple screens in laser shooting galleries.
- Created a game for evaluating guard knowledge.
- Maintained and documented existing and developing software.
- Developed an application to launch games on multiple-screen machines.
Project History
Rosalind Problems
https://github.com/artemkondyukov/rosalind_tasksScientific Article Retrieval System
https://bitbucket.org/ariser/dmdweb/Database Management System
https://bitbucket.org/artemkondyukov/kontrdb/Education
Master's Degree in Bioinformatics
ITMO University - Saint Petersburg
Bachelor's Degree in Computer Science
Innopolis University - Tatarstan
Bachelor's Degree in Biology
Novosibirsk State University - Novosibirsk
Skills
Libraries/APIs
TensorFlow, WinAPI, Keras, SciPy, NumPy, Scikit-learn
Tools
Git, PyCharm, Jupyter, MATLAB
Languages
Python, Python 3, Haskell, C++, SQL, R
Industry Expertise
Bioinformatics
Frameworks
Qt, Django, Flask
Paradigms
Functional Programming, Extreme Programming, Scrum, Agile, Management
Platforms
Linux
Storage
PostgreSQL
Other
Machine Learning, Deep Learning, Computer Vision, Artificial Intelligence (AI), Genomics, Molecular Biology, Simulations, Strategy, Computer Science, Biology
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