Publication
A Comprehensive Introduction To Your Genome With the SciPy Stack
https://www.toptal.com/developers/python/comprehensive-introduction-your-genome-scipy
Zhuyi is currently unavailable
Zhuyi Xue
Verified Expert in Engineering
Machine Learning Developer
Vancouver, BC, Canada
Toptal member since July 26, 2016
Bio
Zhuyi is a skilled Python developer with over seven years of experience. He is also proficient in JavaScript and Scala. He has collected experience in a wide array of technologies with strong focuses on PyData stack, Django, and cloud computing. He is very detail-oriented and proactive, with great communication skills.
Portfolio
Genome Sciences Centre
PyData, Google Cloud Platform (GCP), Django, Machine Learning
TotalWebmaster
Google App Engine
Experience
- Python - 8 years
- JavaScript - 5 years
- Pandas - 5 years
- Google Cloud Platform (GCP) - 5 years
- Scrapy - 4 years
- Django - 4 years
- Machine Learning - 4 years
- Apache Spark - 2 years
Preferred Environment
Tmux, Git, Emacs, Linux
The most amazing...
...web app I've built tracks usage from over eight supercomputers across Canada for my research group.
Work Experience
Computational Biologist
2014 - 2019
Genome Sciences Centre
- Developed multiple pipelines for analyzing massive genomics data in Python.
- Wrote tests with over 80% coverage for an analysis pipeline and developed a progress tracking dashboard in Django.
- Leveraged a Google Cloud platform to deploy massive computation with 15,000 cores.
Technologies: PyData, Google Cloud Platform (GCP), Django, Machine Learning
Lead Developer
2014 - 2015
TotalWebmaster
- Developed both back-end using the WebApp2 framework and front-end in AngularJS.
- Designed the database in Google Cloud Datastore.
- Developed the daily task pipeline of fetching data from Google Search Console and exporting the data into Google Cloud Datastore and Google BigQuery tables.
- Designed and built the front-end dashboard in NVD3.
- Developed the build-deploy-test workflow in Gulp.
Technologies: Google App Engine
Experience
Answer Set for Stanford CS229
Worked out and provided answers to all problem sets in one of the most popular machine learning courses online, CS229 by Stanford.
90 GitHub stars
1.5k views biweekly
90 GitHub stars
1.5k views biweekly
Sutton-barto-rl-exercises
https://github.com/zyxue/sutton-barto-rl-exercisesLearning reinforcement learning by implementing the algorithms from reinforcement learning an introduction Edit
30 GitHub stars
30 GitHub stars
Ncbitax2lin
https://github.com/zyxue/ncbitax2linConvert the whole NCBI taxonomy into lineages of all known organisms.
For example, the taxonomic lineage of human beings is Eukaryota > Chordata > Mammalia > Primates > Hominidae > Homo > Homo sapiens.
37 GitHub stars
For example, the taxonomic lineage of human beings is Eukaryota > Chordata > Mammalia > Primates > Hominidae > Homo > Homo sapiens.
37 GitHub stars
SamFormat
SamFormat interprets genomics code on the client side in a highly responsive manner.
Google rank 2nd if searching for "sam flag" as of this entry.
Google rank 2nd if searching for "sam flag" as of this entry.
RLjs
Reinforcement learning algorithms implemented in JavaScript and React, demonstrated with Gridworld toy example.
TPR Parser
TPR Parser closes a 5-year old feature-request ticket for MDAnalysis, a software package for analyzing molecular dynamics (MD) data in Python. TPR is the file that contains all the structural topology information and running parameters of a MD system in Gromacs encoded by XDR Standard (RFC 1014).
Education
2010 - 2013
Master of Science Degree in Data Science
University of Toronto - Toronto
Certifications
AUGUST 2018 - SEPTEMBER 2020
Google Cloud Certified Professional Data Engineer
Google Cloud
Skills
Libraries/APIs
Pandas, Scikit-learn, SciPy, Matplotlib, NumPy, TensorFlow, PyData, D3.js, Google Maps SDK, jQuery, React
Tools
Emacs, Pytest, IPython, BigQuery, Git, Tmux
Languages
Python, JavaScript, HTML, SQL, Scala, CSS
Frameworks
webapp2, Scrapy, Django, Flask, Django REST Framework, Apache Spark, Bootstrap, Redux, AngularJS
Platforms
Jupyter Notebook, Google App Engine, Linux, Heroku, Google Cloud Platform (GCP), Google Cloud Engine, Amazon Web Services (AWS), Meteor
Industry Expertise
Bioinformatics
Storage
Google Cloud Storage, Google Cloud Datastore, MySQL, PostgreSQL, MongoDB
Other
Machine Learning, Software Development
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