Olivier Caron-Lizotte

Olivier Caron-Lizotte

Montreal, Canada
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Olivier Caron-Lizotte

Olivier Caron-Lizotte

Montreal, Canada
Member since February 5, 2014
CTO of BiogeniQ, Olivier has a background in bioinformatics, full stack development, setting up technology stacks, and management. With extensive experience in cloud based architectures, algorithm design, and implementation, he excels at complex, multidisciplinary projects.
Olivier is now available for hire
Portfolio
Experience
  • Data Science, 6 years
  • Java, 6 years
  • C++, 5 years
  • C#, 5 years
  • Bioinformatics, 5 years
  • Big Data, 5 years
  • Machine Learning, 5 years
Montreal, Canada
Availability
Part-time
Preferred Environment
Atom, Microsoft Visual Studio, Eclipse
The most amazing...
...software I've created is Qadna (qadna.ca), a homomorphic encryption based service for personalized medicine results.
Employment
  • CTO
    Gradsters
    2014 - PRESENT
    • Built all the web services for Gradsters.
    Technologies: Node.js, Heroku
  • CTO
    BiogeniQ
    2014 - PRESENT
    • Built the entire architecture for storing and processing genomic data.
    Technologies: OpenShift
  • Bioinformatician, Developer
    IRIC - University of Montreal
    2009 - PRESENT
    • Was in charge of software development and data analysis of proteomic data.
    Technologies: C#, Java, C++, HTML5, Neo4j
  • Consultant
    OCL Technologies
    2008 - PRESENT
    • Conducted contractual research in bioinformatics.
    Technologies: Java, Neo4j, HTML5, D3.js
  • Programming Analyst, Project Manager, Director of Operations
    123 Certification
    2004 - 2009
    • Designed and developed a portable virtual reality simulator of manual welding processes.
    • Developed a real-time motion capture system.
    • Designed special effects (smoke, fusion, sparks, etc.).
    • Managed the IT infrastructure and technological choices.
    • Led a multidisciplinary team of 5 to 12 people.
    Technologies: Java, OpenGL
  • Developer
    CRIM
    2002 - 2003
    • Corrected facial distortions coming from a wide-angle “pin-hole” camera in real-time.
    • Created a software application performing automatic segmentation of lesions in very high-definition images.
    • Developed video analysis software for face recognition, detection of scene changes, and automatic key frame acquisition.
    Technologies: C++, x86 Assembly
  • Developer
    NOVIKA (CSTPQ)
    2001 - 2001
    • Built software for viewing and editing node states in an Echelon LonWorks network.
    Technologies: Pascal
  • Developer
    Ouellet Canada Inc.
    2000 - 2000
    • Maintained and designed new online reports related to the management of the company.
    Technologies: SQL
Experience
  • OCL Technologies website (Development)
    http://ocltech.ca

    A visually dynamic website making use of HTML5 and D3.js.

  • ISO-PeptidAce (Development)
    https://github.com/olivierlizotte/Iso-PeptidAce

    Stand-alone software for the in silico separation of co-eluting peptide isomers in high resolution mass spectrometry data.

  • List of publications (Other amazing things)

    Cell: The exon junction complex controls the splicing of MAPK and other long intron-containing transcripts in Drosophila.

    Journal of proteome research: Improvement of phosphoproteome analyses using FAIMS and decision tree fragmentation; Application to the insulin signalling pathway in Drosophila melanogaster S2 cells.

    Molecular & Cellular Proteomics: Quantitative proteomics reveals the induction of mitophagy in TNF-α activated macrophages.

    Molecular & Cellular Proteomics: Targeted identification of SUMOylation sites in human proteins using affinity enrichment and paralog-specific reporter ions

Skills
  • Languages
    C#, Java, C++, JavaScript, Python, SQL
  • Misc
    Bioinformatics, Data Science, Big Data, Machine Learning
  • Frameworks
    .NET
  • Libraries/APIs
    D3.js, Node.js, jQuery
  • Tools
    Microsoft Excel, Eclipse, Micorsoft Visual Studio, Inkscape, Mongoose, MonoDevelop, Gimp
  • Paradigms
    Parallel programming, Functional Programming, Agile Software Development
  • Platforms
    Windows, Linux, Xamarin
  • Storage
    Neo4j, MongoDB, NoSQL
Education
  • Master of Science degree in Science
    University of Sherbrooke - Sherbrooke, Canada
    2004 - 2006
  • Bachelor's degree in Computer Science
    University of Sherbrooke - Sherbrooke, Canada
    2001 - 2004
  • College degree in Computer Science
    Cégep de La Pocatière - La Pocatière, Canada
    1998 - 2001
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