Olivier Caron-Lizotte

Olivier Caron-Lizotte

Montreal, Canada
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Olivier Caron-Lizotte

Olivier Caron-Lizotte

Montreal, Canada
Member since February 5, 2014
Olivier is a bioinformatician at IRIC (a cancer research facility). He is also the CTO of BiogeniQ and Gradsters. Olivier has a background in bioinformatics, full stack development, and management. With extensive experience in algorithm design and implementation, he excels at complex, multidisciplinary projects.
Olivier is now available for hire
Portfolio
Experience
  • Data Science, 6 years
  • Java, 6 years
  • C++, 5 years
  • C#, 5 years
  • Bioinformatics, 5 years
  • Big Data, 5 years
  • Machine Learning, 5 years
Montreal, Canada
Availability
Part-time
Preferred Environment
Microsoft Visual Studio, Eclipse, Atom
The most amazing...
...software I've created handles in silico separation of co-eluting peptide isomers in high resolution mass spectrometry data.
Employment
  • CTO
    Gradsters
    2014 - PRESENT
    • Built all the web services for Gradsters.
    Technologies: Node.js, Heroku
  • CTO
    BiogeniQ
    2014 - PRESENT
    • Built the entire architecture for storing and processing genomic data.
    Technologies: OpenShift
  • Bioinformatician, Developer
    IRIC - University of Montreal
    2009 - PRESENT
    • Was in charge of software development and data analysis of proteomic data.
    Technologies: C#, Java, C++, HTML5, Neo4j
  • Consultant
    OCL Technologies
    2008 - PRESENT
    • Conducted contractual research in bioinformatics.
    Technologies: Java, Neo4j, HTML5, D3.js
  • Programming Analyst, Project Manager, Director of Operations
    123 Certification
    2004 - 2009
    • Designed and developed a portable virtual reality simulator of manual welding processes.
    • Developed a real-time motion capture system.
    • Designed special effects (smoke, fusion, sparks, etc.).
    • Managed the IT infrastructure and technological choices.
    • Led a multidisciplinary team of 5 to 12 people.
    Technologies: Java, OpenGL
  • Developer
    CRIM
    2002 - 2003
    • Corrected facial distortions coming from a wide-angle “pin-hole” camera in real-time.
    • Created a software application performing automatic segmentation of lesions in very high-definition images.
    • Developed video analysis software for face recognition, detection of scene changes, and automatic key frame acquisition.
    Technologies: C++, x86 Assembly
  • Developer
    NOVIKA (CSTPQ)
    2001 - 2001
    • Built software for viewing and editing node states in an Echelon LonWorks network.
    Technologies: Pascal
  • Developer
    Ouellet Canada Inc.
    2000 - 2000
    • Maintained and designed new online reports related to the management of the company.
    Technologies: SQL
Experience
  • OCL Technologies website (Development)
    http://ocltech.ca

    A visually dynamic website making use of HTML5 and D3.js.

  • ISO-PeptidAce (Development)
    https://github.com/olivierlizotte/Iso-PeptidAce

    Stand-alone software for the in silico separation of co-eluting peptide isomers in high resolution mass spectrometry data.

  • List of publications (Other amazing things)

    Cell: The exon junction complex controls the splicing of MAPK and other long intron-containing transcripts in Drosophila.

    Journal of proteome research: Improvement of phosphoproteome analyses using FAIMS and decision tree fragmentation; Application to the insulin signalling pathway in Drosophila melanogaster S2 cells.

    Molecular & Cellular Proteomics: Quantitative proteomics reveals the induction of mitophagy in TNF-α activated macrophages.

    Molecular & Cellular Proteomics: Targeted identification of SUMOylation sites in human proteins using affinity enrichment and paralog-specific reporter ions

Skills
  • Languages
    C#, Java, C++, JavaScript, SQL, Python
  • Misc
    Data Science, Bioinformatics, Big Data, Machine Learning
  • Frameworks
    .NET
  • Libraries/APIs
    D3.js, Node.js, jQuery
  • Tools
    Eclipse, Microsoft Excel, Micorsoft Visual Studio, Gimp, Mongoose, MonoDevelop, Inkscape
  • Paradigms
    Parallel programming, Functional programming, Agile Software Development
  • Platforms
    Linux, Windows, Xamarin
  • Storage
    Neo4J, MongoDB, NoSQL
Education
  • Master of Science degree in Science
    University of Sherbrooke - Sherbrooke, Canada
    2004 - 2006
  • Bachelor's degree in Computer Science
    University of Sherbrooke - Sherbrooke, Canada
    2001 - 2004
  • College degree in Computer Science
    Cégep de La Pocatière - La Pocatière, Canada
    1998 - 2001
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