Olivier Caron-Lizotte

Montreal, QC, Canada

Member since February 5, 2014

CTO of BiogeniQ, Olivier has a background in bioinformatics, full stack development, setting up technology stacks, and management. With extensive experience in cloud based architectures, algorithm design, and implementation, he excels at complex, multidisciplinary projects.

Java C#Data Science C++JavaScript Microsoft Visual Studio Big Data .NET Neo4j D3.js Microsoft Excel Linux Windows Python Agile Software Development Show more

Olivier is now available for hire

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Portfolio

Gradsters
Node.js, Heroku
BiogeniQ
OpenShift
IRIC - University of Montreal
C#, Java, C++, HTML5, Neo4j

Experience

Java, 6 years
Data Science, 6 years
Machine Learning (ML), 5 years
Bioinformatics, 5 years
Big Data, 5 years
C++, 5 years
C#, 5 years

Availability

Part-time

Preferred Environment

Atom, Microsoft Visual Studio, Eclipse

The most amazing...

...software I've created is Qadna (qadna.ca), a homomorphic encryption based service for personalized medicine results.

Employment

CTO
Gradsters
2014 - PRESENT
- Built all the web services for Gradsters.
Technologies: Node.js, Heroku
CTO
BiogeniQ
2014 - PRESENT
- Built the entire architecture for storing and processing genomic data.
Technologies: OpenShift
Bioinformatician, Developer
IRIC - University of Montreal
2009 - PRESENT
- Was in charge of software development and data analysis of proteomic data.
Technologies: C#, Java, C++, HTML5, Neo4j
Consultant
OCL Technologies
2008 - PRESENT
- Conducted contractual research in bioinformatics.
Technologies: Java, Neo4j, HTML5, D3.js
Programming Analyst, Project Manager, Director of Operations
123 Certification
2004 - 2009
- Designed and developed a portable virtual reality simulator of manual welding processes.
- Developed a real-time motion capture system.
- Designed special effects (smoke, fusion, sparks, etc.).
- Managed the IT infrastructure and technological choices.
- Led a multidisciplinary team of 5 to 12 people.
Technologies: Java, OpenGL
Developer
CRIM
2002 - 2003
- Corrected facial distortions coming from a wide-angle “pin-hole” camera in real-time.
- Created a software application performing automatic segmentation of lesions in very high-definition images.
- Developed video analysis software for face recognition, detection of scene changes, and automatic key frame acquisition.
Technologies: C++, x86 Assembly
Developer
NOVIKA (CSTPQ)
2001 - 2001
- Built software for viewing and editing node states in an Echelon LonWorks network.
Technologies: Pascal
Developer
Ouellet Canada Inc.
2000 - 2000
- Maintained and designed new online reports related to the management of the company.
Technologies: SQL

Experience

OCL Technologies website (Development)
http://ocltech.ca
A visually dynamic website making use of HTML5 and D3.js.
ISO-PeptidAce (Development)
https://github.com/olivierlizotte/Iso-PeptidAce
Stand-alone software for the in silico separation of co-eluting peptide isomers in high resolution mass spectrometry data.
List of publications (Other amazing things)
Cell: The exon junction complex controls the splicing of MAPK and other long intron-containing transcripts in Drosophila.

Journal of proteome research: Improvement of phosphoproteome analyses using FAIMS and decision tree fragmentation; Application to the insulin signalling pathway in Drosophila melanogaster S2 cells.

Molecular & Cellular Proteomics: Quantitative proteomics reveals the induction of mitophagy in TNF-α activated macrophages.

Molecular & Cellular Proteomics: Targeted identification of SUMOylation sites in human proteins using affinity enrichment and paralog-specific reporter ions

Skills

Languages
C#, Java, C++, JavaScript, Python, SQL
Paradigms
Data Science, Parallel & Distributed Computing, Functional Programming, Agile Software Development
Other
Bioinformatics, Big Data, Machine Learning (ML)
Frameworks
.NET
Libraries/APIs
D3.js, Node.js, jQuery
Tools
Microsoft Excel, Microsoft Visual Studio, Eclipse IDE, MonoDevelop, Inkscape, Gimp, Mongoose
Platforms
Linux, Windows, Xamarin
Storage
Neo4j, NoSQL, MongoDB

Education

Master of Science degree in Science
University of Sherbrooke - Sherbrooke, Canada
2004 - 2006
Bachelor's degree in Computer Science
University of Sherbrooke - Sherbrooke, Canada
2001 - 2004
College degree in Computer Science
Cégep de La Pocatière - La Pocatière, Canada
1998 - 2001

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